rPICARD: A CASA-based Calibration Pipeline for VLBI Data

Currently, HOPS and AIPS are the primary choices for the time-consuming process of (millimeter) Very Long Baseline Interferometry (VLBI) data calibration. However, for a full end-to-end pipeline, they either lack the ability to perform easily scriptable incremental calibration or do not provide full control over the workflow with the ability to manipulate and edit calibration solutions directly. The Common Astronomy Software Application (CASA) offers all these abilities, together with a secure development future and an intuitive Python interface, which is very attractive for young radio astronomers. Inspired by the recent addition of a global fringe-fitter, the capability to convert FITS-IDI files to measurement sets, and amplitude calibration routines based on ANTAB metadata, we have developed the the CASA-based Radboud PIpeline for the Calibration of high Angular Resolution Data (rPICARD). The pipeline will be able to handle data from multiple arrays: EHT, GMVA, VLBA and the EVN in the first release. Polarization and phase-referencing calibration are supported and a spectral line mode will be added in the future. The large bandwidths of future radio observatories ask for a scalable reduction software. Within CASA, a message passing interface (MPI) implementation is used for parallelization, reducing the total time needed for processing. The most significant gain is obtained for the time-consuming fringe-fitting task where each scan be processed in parallel.Comment: 6 pages, 1 figure, EVN 2018 symposium proceeding

The challenge of valuing ecosystem services that have no material benefits

Since the Millennium Ecosystem Assessment, ecosystem service science has made much progress in framing core concepts and approaches, but there is still debate around the notion of cultural services, and a growing consensus that ecosystem use and ecosystem service use should be clearly differentiated. Part of the debate resides in the fact that the most significant sources of conflict around natural resource management arise from the multiple managements (uses) of ecosystems, rather than from the multiple uses of ecosystem services. If the ecosystem approach or the ecosystem service paradigm are to be implemented at national levels, there is an urgent need to disentangle what are often semantic issues, revise the notion of cultural services, and more broadly, practically define the less tangible ecosystem services on which we depend. This is a critical step to identifying suitable ways to manage trade-offs and promote adaptive management. Here we briefly review the problems associated with defining and quantifying cultural ecosystem services and suggest there could be merit in discarding this term for the simpler non-material ecosystem services. We also discuss the challenges in valuing the invaluable, and suggest that if we are to keep ecosystem service definition focused on the beneficiary, we need to further classify these challenging services, for example by differentiating services to individuals from services to communities. Also, we suggest that focussing on ecosystem service change rather than simply service delivery, and identifying common boundaries relevant for both people and ecosystems, would help meet some of these challenges

Acting on an environmental health disaster: the case of the Aral Sea.

The Aral Sea area in Central Asia has been encountering one of the world's greatest environmental disasters for more than 15 years. During that time, despite many assessments and millions of dollars spent by large, multinational organizations, little has changed. The 5 million people living in this neglected and virtually unknown part of the world are suffering not only from an environmental catastrophe that has no easy solutions but also from a litany of health problems. The region is often dismissed as a chronic problem where nothing positive can be achieved. Within this complicated context, Medecins Sans Frontieres, winner of the Nobel Peace Prize in 1999, is actively trying to assess the impact of the environmental disaster on human health to help the people who live in the Aral Sea area cope with their environment. Medecins Sans Frontieres has combined a direct medical program to improve the health of the population while conducting operational research to gain a better understanding of the relationship between the environmental disaster and human health outcomes. In this paper we explore the health situation of the region and the broader policy context in which it is situated, and present some ideas that could potentially be applied to many other places in the world that are caught up in environmental and human health disasters

Correction: The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

The authors would like to amend this article based on the discovery that the originally published Acacia ligulata sequence contains assembly errors, which came to light after the publication of the article

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia

Combining whole genome data with previously obtained amplicon sequences has the potential to increase the resolution of phylogenetic analyses, particularly at low taxonomic levels or where recent divergence, rapid speciation or slow genome evolution has resulted in limited sequence variation. However, the integration of these types of data for large scale phylogenetic studies has rarely been investigated. Here we conduct a phylogenetic analysis of the whole chloroplast genome and two nuclear ribosomal loci for 65 Acacia species from across the most recent Acacia phylogeny. We then combine this data with previously generated amplicon sequences (four chloroplast loci and two nuclear ribosomal loci) for 508 Acacia species. We use several phylogenetic methods, including maximum likelihood bootstrapping (with and without constraint) and ExaBayes, in order to determine the success of combining a dataset of 4000 bp with one of 189,000 bp. The results of our study indicate that the inclusion of whole genome data gave a far better resolved and well supported representation of the phylogenetic relationships within Acacia than using only amplicon sequences, with the greatest support observed when using a whole genome phylogeny as a constraint on the amplicon sequences. Our study therefore provides methods for optimal integration of genomic and amplicon sequences

Suxibuzona en la clínica canina

Los procesos patológicos y secuelas originadas por traumatismos, esfuerzos, choques, intervenciones quirúrgicas, etc., que dan lugar a dolor, inflamación e incluso fiebre, son frecuentes en la clínica canina. En la resolución de este tipo de procesos resulta útil y necesaria una terapéutica antiinflamtoria que, aún siendo sintomática, los resuelve por si sola en muchos casos o hacen su pronóstico mucho más favorable, o bien complementan eficazmente los tratamientos quirúrgicos correspondientes. Un nuevo antiinflamatorio, análgesico y antipirético en clínica canina, denominado Suxibuzona, ha sido experimentado por vía oral con resultados satisfactorios en el tratamiento de procesos traumáticos, miositis-reumatismo, nueralgías y afecciones osteoarticulares

An accretion model for the growth of the central black hole associated with ionization instability in quasars

A possible accretion model associated with the ionization instability of quasar disks is proposed to address the growth of the central black hole harbored in the host galaxy.The mass ratio between black hole and its host galactic bulge is a nature consequence of our model.Comment: submitted to ApJ, 15 page